where

*s(s,t)*is total number of shortest paths from node

*s*to node

*t*and

*s*is the number of those paths that pass through

_{v}(s,t)*v*.

Let's see how to compute the betweenness with networkx. As first step we have to load a sample network (yes, it's the same of this post):

# read the graph (gml format) G = nx.read_gml('lesmiserables.gml',relabel=True)Now we have a representation G of our network and we can use the function betweenness_centrality() to compute the centrality of each node. This function returns a list of tuples, one for each node, and each tuple contains the label of the node and the centrality value. We can use this information in order to trim the original network and keep only the most important nodes:

def most_important(G): """ returns a copy of G with the most important nodes according to the pagerank """ ranking = nx.betweenness_centrality(G).items() print ranking r = [x[1] for x in ranking] m = sum(r)/len(r) # mean centrality t = m*3 # threshold, we keep only the nodes with 3 times the mean Gt = G.copy() for k, v in ranking: if v < t: Gt.remove_node(k) return Gt Gt = most_important(G) # trimmingAnd we can use the original network and the trimmed one to visualize the network as follows:

from pylab import show # create the layout pos = nx.spring_layout(G) # draw the nodes and the edges (all) nx.draw_networkx_nodes(G,pos,node_color='b',alpha=0.2,node_size=8) nx.draw_networkx_edges(G,pos,alpha=0.1) # draw the most important nodes with a different style nx.draw_networkx_nodes(Gt,pos,node_color='r',alpha=0.4,node_size=254) # also the labels this time nx.draw_networkx_labels(Gt,pos,font_size=12,font_color='b') show()The graph should be like this one:

This graph is pretty interesting, indeed it highlights the nodes which are very influential on the way the information spreads over the network. In the sample network we used each node represents a character and the connection between two characters represent the coappearance in the same chapter of the book 'Les miserable'. Looking at the graph we can easily say what are the most important characters according to the Betweenness Centrality. We can also observe some interesting situations like the ones of Valjean and Myriel. They are to connected to groups of characters who don't have a direct connection with the main ones.

I pasted the code of this post to http://www.pypedia.com:

ReplyDeletehttp://bit.ly/14Yesv1

Just press "Run"

(You can change the code and see the respective changes of the graph

Thank you Alexandros! I didn't know about pypedia. It's seems an interesting project.

ReplyDelete